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Infectious diseases
First reported case of extensively drug‐resistant typhoid in Australia
To the Editor: The period from January to March marks the peak season for travellers returning to Australia, and typhoid is a key illness of concern. Since 2016, an extensively drug‐resistant (XDR) typhoid clade has emerged in Pakistan, showing resistance to all first‐line agents.1,2 Over the past 2 years, seven cases have been reported in returned travellers — mostly children — from Pakistan to England, Germany and the United States.1,3,4 We report here the first case of XDR typhoid identified in Australia. A 20‐month‐old Australian‐born girl presented to the Children's Hospital at Westmead with features of enteric fever 14 days after her return from a 3‐month trip to Karachi. Diarrhoea began in Pakistan 6 weeks before her return, and continued despite the use of oral antibiotics prescribed locally in Pakistan. Ten days of high fevers, irritability, vomiting and reduced oral intake prompted admission to our hospital. She was a previously well child and had received routine vaccines. No additional pre‐travel vaccinations had been recommended. Blood and stool cultures grew extended spectrum β‐lactamase‐producing Salmonella enterica serovar Typhi. The isolate showed microbiological features typical for the XDR clade, with resistance to chloramphenicol, ampicillin, trimethoprim–sulfamethoxazole, fluoroquinolones and third‐generation cephalosporins (Box). The isolate was susceptible to meropenem and had an azithromycin minimum inhibitory concentration of 12 mg/L. The child responded to intravenous meropenem and oral azithromycin and was discharged after an uncomplicated 8‐day admission to complete a further week of azithromycin. Notification to the local public health unit facilitated contact tracing. This case was one of 12 travel‐associated, culture‐positive enteric fever cases managed at our hospital in the first 3 months of 2019. This continues a trend toward a higher incidence of enteric fever, as previously reported at our hospital from 2003 to 2015.5 This case highlights the emerging threat of XDR typhoid and the broader global issue of escalating antimicrobial resistance, to which Australia is not immune, especially given increasing travel connectivity. Typhoid must be considered as a diagnosis for febrile returned travellers from endemic regions, including South and South‐East Asia. Typhoid vaccination is recommended from 2 years of age if travel is planned to these regions. The important role of general practitioners in providing travel‐related vaccine advice and care to returning travellers must not be underestimated. Box – European Committee on Antimicrobial Susceptibility Testing (EUCAST) disc diffusion demonstrating zones of inhibition to cefotaxime (COX), amoxicillin–clavulanate (AMC), cefepime (FEP), meropenem (MEM), ampicillin (AMP), imipenem (IMP), ciprofloxacin (CIP), amikacin (AKN), piperacillin–tazobactam (PTZ), fosfomycin (FOS); trimethoprim–sulfamethoxazole (SXT) and gentamicin (GMN)
Annaleise Howard‐Jones · Alison M Kesson · Alexander C Outhred · Philip N Britton
Record number of influenza tests in 2019, not a “mutant flu crisis”
Over two decades of Dutch experience can inform deliberations about the nature of a regulatory framework in Australian jurisdictions
Vicky Sheppeard · Robin Gilmour · Sean Tobin
Disseminated histoplasmosis in a patient with Crohn's disease on dual immunosuppression
A 76- year- old man from rural Victoria presented with 4 months of difficulty swallowing due to a painful, large, non-healing tongue ulcer
Michael B MacIsaac · Sasha R Fehily · Stephen Muhi · Linda Yang · Penelope A McKelvie · Cameron J Jeremiah · Barbara Demediuk
Poliomyelitis outbreak in Papua New Guinea: health system and health security implications for PNG and Australia
To help PNG prevent and respond to infectious disease outbreaks of domestic and international concern, Australia must continue to provide high level technical and financial support
John J Hall · Tabian Ambang · Augustine Asante · Pili Mapira · Adam Craig · Elisabeth Schuele · Maha Pervaz Iqbal
Locally acquired extended‐spectrum β‐lactamase Shigella infection
A 32- year- old Australian- born, human immunodeficiency virus (HIV) negative man presented to hospital with 3 days of cramping abdominal pain, diarrhoea and fevers, 5 days after having unprotected receptive anal intercourse
Hui‐Ling Yeoh · Victoria Hall · Deborah A Williamson · Bradley J Gardiner
The risk of resistance: what are the major antimicrobial resistance threats facing Australia?
Collaborative systems are required to combat the rising challenge of antimicrobial resistance in health care facilities and the community
Deborah A Williamson · Benjamin P Howden · David L Paterson
Australia's response to the global threat of antimicrobial resistance: past, present and future
Antimicrobial resistance is a global problem that needs long term solutions and major resource investments
Joshua S Davis · Cheryl A Jones · Allen C Cheng · Benjamin P Howden
The WHO resolution on sepsis: what action is needed in Australia?
Australia needs a coordinated nationwide plan to reduce preventable deaths and disability from sepsis
Luregn J Schlapbach · Kelly Thompson · Simon R Finfer
The false dichotomy of viral versus bacterial aetiology in upper respiratory tract infections
It' s time to move away from the viral versus bacterial dichotomy and embrace an evidencebased syndromic approach
Joshua S Davis · Parker J Magin · Mieke L Driel
Infections in pregnancy
Routine and risk-based antenatal screening identifies some vertically transmissible infections that can be prevented or treated in pregnancy
Caitlin L Keighley · Hannah JM Skrzypek · Angela Wilson · Michael A Bonning · Gwendolyn L Gilbert
Adjunctive bacteriophage therapy for prosthetic valve endocarditis due to Staphylococcus aureus
To the Editor: Infective endocarditis with Staphylococcus aureus is associated with a high mortality despite optimal antibiotic therapy.1 The synergy between bacteriophages and antibiotics has been shown in vitro and in animal studies,2 and bacteriophages have demonstrated their value in severe bacterial infections.3 AB‐SA01 (AmpliPhi Biosciences) is a bacterial DNA‐free and protein‐free highly purified preparation of three obligately lytic Myoviridae, each at 109 plaque‐forming units per dose.4 This preparation has been recently used successfully for staphylococcal sinusitis by local irrigation.5 A protocol was established for bacteriophage therapy as an adjunct to standard care of severe staphylococcal infections under the auspices of the Therapeutic Goods Administration Special Access Scheme. Here, we report the first intravenous use of AB‐SA01 in a case of severe staphylococcal sepsis with prosthetic valve endocarditis. A 65‐year‐old man with a 30‐year‐old mechanical aortic valve presented with a week of malaise, severe exertional dyspnoea, and central pleuritic chest pain. He had been successfully treated for Haemophilus aphrophilus aortic valve endocarditis 8 years earlier with antibiotics alone. Examination revealed fever, tachypnoea, tachycardia and borderline hypotension (90–100 mmHg systolic), with a praecordial systolic murmur and click. There was no cardiac, renal or hepatic failure or any evident peripheral embolic sequelae of endocarditis (haematuria, splinter haemorrhages) at this stage. Blood cultures repeatedly grew an identical methicillin‐sensitive S. aureus determined by whole genome sequencing, and the patient received high dose intravenous flucloxacillin, ciprofloxacin and rifampicin (Box). Transoesophageal echocardiography confirmed vegetations on prosthetic aortic and native mitral valves, and the aortic root was thickened with possible paravalvular root abscess. Scheduled cardiopulmonary bypass for operative source control was postponed after a haemorrhagic infarction in the distribution of the left anterior cerebral artery on day −7 (ie, a week before starting bacteriophage therapy), despite concerns regarding development of an aortic root abscess, ongoing fevers and hypotension. Intravenous AB‐SA01 was administered twice a day for 14 days in conjunction with the patient's prescribed antibiotics, commencing (Day 1) 9 days after his first positive blood culture. Blood cultures were negative at onset of bacteriophage therapy, and the C‐reactive protein, temperature, and white cell count results showed downward trends within 24 hours (Box). This trajectory was only interrupted by splenic infarction and occlusion of the superior mesenteric artery 48 hours after commencement, which was proven on computed tomography scan (not shown). No fevers, tachycardia, hypotension or rashes were detected after bacteriophage infusions and no adverse sequelae were attributable to the therapy. The patient recovered after 40 days of antibiotic therapy and returned to his home state for follow‐up. A positron emission tomography scan on Day 80 showed no fluorodeoxyglucose‐avid lesions, including intracardiac lesions. Repeat echocardiogram on Day 98 for progressive heart failure showed severely dilated left ventricle with moderate mitral and trivial aortic regurgitation. A possible mechanical aortic valve vegetation and paravalvular phlegmon were again demonstrated. Blood cultures were negative. He declined surgical intervention and died on Day 103. To our knowledge, this was the first case of staphylococcal prosthetic valve endocarditis treated with intravenous bacteriophage (AB‐SA01), which complies with good manufacturing practice standards.4 Bacteriophage infusions were well tolerated. Future controlled trials are needed to evaluate adjunctive bacteriophage therapy, especially when surgical intervention is not feasible. Box – Graphical representation of antimicrobial treatment, bacteriophage therapy and inflammatory markers − = negative blood cultures; + = positive blood cultures; CRP = C‐reactive protein; SMA = superior mesenteric artery; WCC = white cell count. ◆
Timothy Gilbey · Josephine Ho · Louise A Cooley · Aleksandra Petrovic Fabijan · Jonathan R Iredell
Leprosy in Far North Queensland: almost gone, but not to be forgotten
Leprosy remains a significant problem in PNG, and assistance from Australia would help both countries
Allison Hempenstall · Simon Smith · Josh Hanson
An urgent need for antimicrobial stewardship in Indigenous rural and remote primary health care
Infectious disease burden, antimicrobial use and resistance highlight the need for antimicrobial stewardship in Indigenous communities
Asha C Bowen · Kathryn Daveson · Lorraine Anderson · Steven YC Tong
Reduced VRE and MRSA colonisation and infection following sustained reduction in broad spectrum antibiotic use in a large tertiary hospital
Reducing broad spectrum antibiotic use was associated with reduced VRE transmission and infection
John K Ferguson · Sally A Munnoch · Kristi Kozierowski · Simon Chiu · Christopher Oldmeadow
HPV vaccination coverage and course completion rates for Indigenous Australian adolescents, 2015
Improving completion rates for Indigenous Australian women are needed to end their higher burden of cervical cancer
Julia ML Brotherton · Karen L Winch · Genevieve Chappell · Carolyn Banks · Dennis Meijer · Sonya Ennis · Karen Peterson · Rosalind Webby · Lisa J Whop
Routine cervical screening by primary HPV testing: early findings in the renewed National Cervical Screening Program
The renewed program is performing as expected during the initial HPV screening round
Dorothy A Machalek · Jennifer M Roberts · Suzanne M Garland · Julia Thurloe · Adele Richards · Ian Chambers · Terri Sivertsen · Annabelle Farnsworth
Protecting pregnant women and their newborn from life‐threatening infections
Pertussis and influenza vaccinations should be incorporated into antenatal care and accurately documented
Helen S Marshall · Gayatri Amirthalingam
Call for a national sore throat guideline
To the Editor: Pharyngitis, a common childhood illness, accounts for around 3% of presentations to general practice in Australia.1 Although usually benign and self‐limiting, group A streptococcus (GAS) pharyngitis, isolated in up to 20% of symptomatic children,2 can lead to infectious and autoimmune sequelae. Despite Australia being a high income country, acute rheumatic fever (ARF) and rheumatic heart disease (RHD) still cause significant morbidity and mortality in Aboriginal and Torres Strait Islander people.3 Prompt treatment of GAS pharyngitis has been shown to reduce the incidence of ARF by two‐thirds in high risk individuals.4 Low risk individuals require supportive management only.5 Clinical diagnosis of GAS pharyngitis is unreliable4 and culture results take time. As such, clinicians must balance the competing priorities of appropriate treatment of patients at high risk of ARF or RHD with prudent antimicrobial stewardship. Clinical practice guidelines play an important role in decision making at both a population and individual level. We undertook a search to identify Australian and New Zealand pharyngitis guidelines and compared these with previously published criteria.6 Nine guidelines were identified. Inconsistences in diagnosis, definition of high risk groups, analgesia, antibiotic rationale, agent, therapy duration, and tonsillectomy indications were observed (Box). Australia's multitude of heterogenic guidelines coupled with the transient workforce in remote Australia, where ARF burden is the highest,7 predispose to management confusion and potential poor patient outcomes, including higher rates of ARF and RHD, and also fail to address the growing worldwide problem of antimicrobial resistance. Australia needs a single national pharyngitis guideline to assist in providing rational, consistent and timely antibiotic treatment to patients at high risk of ARF, while minimising inappropriate antibiotic usage and resistance in individuals at low risk of sequelae. We call for an evidence‐based guideline that includes the following: a clear, succinct approach to diagnosis and management; a definition of individuals at high risk of ARF, and rationale for antibiotic treatment; clear guidance regarding throat culture and point‐of‐care testing for GAS; rationale for first‐ and second‐line empirical antibiotics, with alternatives for penicillin allergy; capacity to adapt management in different clinical settings; and supportive care recommendation including analgesia, tonsillectomy and school exclusion. Box – Summary of selected criteria:6 are criteria addressed by each sore throat guideline? Guidelines NZ HF BPAC NZ CH QLD NSW ICCPG CARPA RHD Aust PCH RCH eTG Number of criteria addressed 6/12 7/12 2/12 10/12 7/12 6/12 10/12 9/12 10/12 Diagnostic criteria × × × ✓ ✓ × ✓ × ✓ Routine throat culture/rapid antigen detection testing ✓ ✓ × ✓ × ✓ ✓ ✓ × Antibiotics to reduce symptoms × ✓ × ✓ × × ✓ × ✓ Antibiotics to prevent complications ✓ ✓ × ✓ ✓ ✓ ✓ ✓ ✓ NZHF = New Zealand Heart Foundation (http://www.heartfoundation.org.nz/shop/heart-healthcare/non-stock-resources/sore-throat-algorithm.pdf); BPAC = Best Practice Advocacy Centre (https://bpac.org.nz/antibiotics/guide.aspx#sore-throat); CH QLD = Children's Health Queensland Hospital and Health Service guidelines (http://www.childrens.health.qld.gov.au/chq/health-professionals/antimicrobial-stewardship/guidelines/ent-infections); NSW ICCPG = New South Wales infants and children clinical practice guidelines (http://www1.health.nsw.gov.au/pds/ActivePDSDocuments/GL2014_021.pdf); CARPA = Central Australian Rural Practitioners Association's standard treatment manual (https://docs.remotephcmanuals.com.au/review/g/manuals2017-manuals/d/20321.html?page=115); RHD Aust = rheumatic heart disease Australian guidelines (https://www.rhdaustralia.org.au/arf-rhd-guideline); PCH = Perth Children's Hospital emergency department guidelines (https://pch.health.wa.gov.au/For-health-professionals/Emergency-Department-Guidelines/Tonsillitis); RCH = Royal Children's Hospital Melbourne guidelines (with support of the Victorian Paediatric Clinical Network) (www.rch.org.au/clinicalguide/guideline_index/Sore_throat); eTG = electronic therapeutic guidelines (https://tgldcdp.tg.org.au/searchAction?appendedInputButtons=sore%20throat). ◆
Adrian J Tarca · Robert M Hand · Rosemary Wyber
Respiratory syncytial virus‐associated hospitalisations in Australia, 2006–2015
National population-level analysis provides valuable insights into severe RSV-associated disease
Gemma L Saravanos · Meru Sheel · Nusrat Homaira · Aditi Dey · Edward Brown · Han Wang · Kristine Macartney · Nicholas J Wood
Pre‐conception care: an important yet underutilised preventive care strategy
To the Editor: Bateson and Black1 do a great service in encouraging clinicians to discuss pre‐conception care with women of reproductive age.1 However, in relation to infection prevention, one area not discussed was cytomegalovirus (CMV) infection, which is the most common infectious cause and the second most common aetiology of all causes of severe congenital malformations.2 Mother to child transmission of CMV can result in prematurity, stillbirth, cerebral palsy and neurodevelopmental delay and is the most common infectious cause of hearing loss.2 Discussions about CMV prevention should ideally commence before pregnancy, as maternal CMV infection in the first trimester poses the greatest risk of harm to the fetus if mother to child transmission occurs. Such discussions should continue throughout pregnancy, as secondary maternal infection with a different strain of CMV can also result in mother to child transmission of virus,2 although the risk per infectious event is lower. Women can adopt simple hygiene strategies to reduce risk of CMV infection and thus reduce mother to child transmission of virus during pregnancy. These recommendations have been published3 and referenced in consensus recommendations2 and other sources.4 Strategies preventing women acquiring CMV (usually from children)3 are acceptable and inexpensive — handwashing, not sharing food or objects covered with children's saliva, not kissing children on the lips and wearing disposable gloves during nappy changes. These strategies reduce the risk of infection before pregnancy and of mother to child transmission during pregnancy;2 they do not affect reactivation of latent virus, although this is associated with lower mother to child transmission. Universal serological screening with CMV IgG to determine previous immunity is not recommended, as congenital CMV can still occur as a result of non‐primary maternal infection and reactivation during pregnancy. Women should be advised to use hygiene strategies regardless of their serological status.2 In Australia, only one in six women who are pregnant know about CMV,5 and only one in ten maternity clinicians routinely discuss CMV prevention with pregnant women.6 It is likely fewer discuss CMV prevention before conception. We encourage clinicians, women considering pregnancy and parents to increase their knowledge about CMV and its prevention.4
Antonia Shand · Pamela Palasanthiran · William D Rawlinson
Pre‐conception care: an important yet underutilised preventive care strategy
In reply
Deborah J Bateson · Kirsten I Black
Mycobacterial mimicry in a man from Myanmar
A 26-year-old refugee from Myanmar was referred to the infectious diseases unit of an Australian teaching hospital
David WJ Griffin · G Khai Lin Huang · Philippe Lachapelle · Steven YC Tong · Siddhartha Mahanty
Early success with room for improvement: influenza vaccination of young Australian children
As the influenza vaccine is given annually within a relatively short time frame, there are unique challenges to achieving coverage similar to other childhood vaccines
Frank H Beard · Alexandra J Hendry · Kristine Macartney
Acute kidney injury in Indigenous Australians in the Kimberley: age distribution and associated diagnoses
Infectious conditions were common among patients, underscoring the significance of environmental determinants of health
Joseph V Mohan · David N Atkinson · Johan B Rosman · Emma K Griffiths
Influenza and pertussis vaccination of women during pregnancy in Victoria, 2015–2017
Pertussis vaccination of pregnant women in Victoria has increased, but influenza vaccination rates remain moderate and variable
Stacey L Rowe · Kirsten P Perrett · Rosemary Morey · Nicola Stephens · Benjamin C Cowie · Terry M Nolan · Karin Leder · Helen Pitcher · Brett Sutton · Allen C Cheng