Connect
MJA
MJA

The false dichotomy of viral versus bacterial aetiology in upper respiratory tract infections

Joshua S Davis, Parker J Magin and Mieke L Driel
Med J Aust 2019; 211 (3): . || doi: 10.5694/mja2.50250
Published online: 5 August 2019

It's time to move away from the viral versus bacterial dichotomy and embrace an evidence‐based syndromic approach

Antimicrobial resistance is a key emerging threat to human health, driven largely by overuse of antibiotics in humans and animals.1 Upper respiratory tract infections (URTIs) are the most common indication for which antibiotics are prescribed in the community,2 despite the fact that antibiotics are of minimal benefit for most of these syndromes. We define URTI broadly to include acute rhinitis, bronchitis, otitis media, pharyngitis and sinusitis. When faced with a patient presenting with symptoms and signs of a URTI, general practitioners face many challenges to antimicrobial stewardship, including patient expectation, but they often frame the problem as “is this viral or bacterial?”. They then base their decision to prescribe antibiotics or not on this distinction. GPs cite diagnostic uncertainty about viral versus bacterial aetiology as a key factor driving their antibiotic prescribing for URTIs.3 Many educational resources aimed both at prescribers and the community refer to the viral versus bacterial paradigm to inform the choice of whether antibiotics should be prescribed or not.


  • 1 Menzies School of Health Research, Darwin, NT
  • 2 John Hunter Hospital, Newcastle, NSW
  • 3 University of Newcastle, Newcastle, NSW
  • 4 GP Synergy, Newcastle, NSW
  • 5 University of Queensland, Brisbane, QLD


Correspondence: joshua.davis@menzies.edu.au

Competing interests:

No relevant disclosures.

  • 1. O'Neill J. Antimicrobial resistance: tackling a crisis for the health and wealth of nations. Rev Antimicrob Resist 2014; 20: 1–16.
  • 2. Goossens H, Ferech M, Vander Stichele R, et al. Outpatient antibiotic use in Europe and association with resistance: a cross‐national database study. Lancet 2005; 365: 579–587.
  • 3. Horwood J, Cabral C, Hay AD, Ingram J. Primary care clinician antibiotic prescribing decisions in consultations for children with RTIs: a qualitative interview study. Br J Gen Pract 2016; 66: e207–e213.
  • 4. Ahovuo‐Saloranta A, Borisenko OV, Kovanen N, et al. Antibiotics for acute maxillary sinusitis. Cochrane Database Syst Rev 2008; (2): CD000243.
  • 5. Smith SM, Fahey T, Smucny J, Becker LA. Antibiotics for acute bronchitis. Cochrane Database Syst Rev 2017; (6): CD000245.
  • 6. Spinks A, Glasziou PP, Del Mar CB. Antibiotics for sore throat. Cochrane Database Syst Rev 2013; (11): CD000023.
  • 7. Wylie KM. The virome of the human respiratory tract. Clin Chest Med 2017; 38: 11–19.
  • 8. Unger SA, Bogaert D. The respiratory microbiome and respiratory infections. J Infect 2017; 74 Suppl 1: S84–S88.
  • 9. Byington CL, Ampofo K, Stockmann C, et al. Community surveillance of respiratory viruses among families in the Utah Better Identification of Germs‐Longitudinal Viral Epidemiology (BIG‐LoVE) Study. Clin Infect Dis 2015; 61: 1217–1224.
  • 10. Chan CL, Wabnitz D, Bardy JJ, et al. The microbiome of otitis media with effusion. Laryngoscope 2016; 126: 2844–2851.
  • 11. Marsh RL, Smith‐Vaughan HC, Chen ACH, et al. Multiple respiratory microbiota profiles are associated with lower airway inflammation in children with protracted bacterial bronchitis. Chest 2019; 155: 778–786.
  • 12. Hanada S, Pirzadeh M, Carver KY, Deng JC. Respiratory viral infection‐induced microbiome alterations and secondary bacterial pneumonia. Front Immunol 2018; 9: 2640.
  • 13. Zaura E, Brandt BW, Teixeira de Mattos MJ, et al. Same exposure but two radically different responses to antibiotics: resilience of the salivary microbiome versus long‐term microbial shifts in feces. MBio 2015; 6: e01693–15.
  • 14. Low M, Neuberger A, Hooton TM, et al. Association between urinary community‐acquired fluoroquinolone‐resistant Escherichia coli and neighbourhood antibiotic consumption: a population‐based case‐control study. Lancet Infect Dis 2019; 19: 419–428.
  • 15. Costelloe C, Metcalfe C, Lovering A, et al. Effect of antibiotic prescribing in primary care on antimicrobial resistance in individual patients: systematic review and meta‐analysis. BMJ 2010; 340: c2096.

Author

remove_circle_outline Delete Author
add_circle_outline Add Author

Comment
Do you have any competing interests to declare? *

I/we agree to assign copyright to the Medical Journal of Australia and agree to the Conditions of publication *
I/we agree to the Terms of use of the Medical Journal of Australia *
Email me when people comment on this article

Online responses are no longer available. Please refer to our instructions for authors page for more information.